Scaffold Ga0075015_100763962

Overview

Basic Information

• Taxon OID: 3300006102
• Scaffold ID: Ga0075015_100763962
• Source Dataset Name: Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2013
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 578
• Total Scaffold Genes: 1
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Tremellomycetes → Tremellales → Cryptococcaceae → Cryptococcus → Cryptococcus neoformans species complex → Cryptococcus neoformans (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds → Freshwater And Sediment Microbial Communities From Various Areas In North America, Analyzing Microbe Dynamics In Response To Fracking

Source Dataset Sampling Location

• Location Name: USA: Pennsylvania
• Coordinates
  • Lat. (^o): 41.1752
  • Long. (^o): -78.4168

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006284	Metagenome / Metatranscriptome	377	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0075015_1007639621	F006284	N/A	VYPYYPYDYSYLDYGPDNDYQYGDNSAASVQPESFRPAVDHGPVVVSINTGNSRPMDSRANAAYINSGYSSTDAAGQQRIVMQDPNEKIGPRADPTTFVPPTVPQATQTAAKGTQKTPQAHAGVFGNLVLVSWLEDAGKDVIYVQNTETNDVQKITSEPNLDNFRIVELHPNADPRLFEAVISNGSQQGPVR