Scaffold Ga0007806_1060054

Overview

Basic Information

• Taxon OID: 3300006100
• Scaffold ID: Ga0007806_1060054
• Source Dataset Name: Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE18Aug09
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 720
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 1

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Crystal Bog, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0072
  • Long. (^o): -89.6063

Associated Families

Family	Category	Number of Sequences	3D Structure?
F084970	Metagenome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0007806_10600542	F084970	GAG	MSTNVALCETQRISYREWKEEDWLLRFAREGVQKARLLVLHVVFGPQRCPNVELY*
Ga0007806_10600543	F084970	GAG	MCTNGALCETQRISYREWKEEDWSLRFAREGVQKARLLVLHVVFGPQRCPNVELY*
Ga0007806_10600544	F084970	GAG	MSTNVALCETHRISYREWKEEDWLLRFAREGVQKARLLVLHVVFGPQRCPNVELY*
Ga0007806_10600545	F084970	GAG	MRTNVALCETHRISYREWKEEDWLLRFAREGVQKARL