Scaffold Ga0080690_1018576

Overview

Basic Information

• Taxon OID: 3300006099
• Scaffold ID: Ga0080690_1018576
• Source Dataset Name: Intestinal microbial communities from Inflammed Rag1 mice from UTSWMC, Dallas, Texas, USA - t1_683P_control - viral_metagenome
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Texas Southwestern Medical Center
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1014
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Mammals → Digestive System → Unclassified → Unclassified → Mouse Feces → Intestinal Microbial Communities From Inflammed Rag1 Mice From Utswmc, Dallas, Texas, Usa

Source Dataset Sampling Location

• Location Name: UT Southwestern Medical Center, Dallas, Texas, USA
• Coordinates
  • Lat. (^o): 32.815891
  • Long. (^o): -96.846336

Associated Families

Family	Category	Number of Sequences	3D Structure?
F082888	Metagenome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0080690_10185762	F082888	AGGAG	MAQIIEIIVENKNYQIEWALSEYFGELKGKKFMLNKMAAEQIEMINNLSNTAKILLSAVAGAVIQHLIDNNCPIDNIFENGYFIVKN*FINSNCTTKNINNYSKPI*