Scaffold Ga0097679_1054120

Overview

Basic Information

• Taxon OID: 3300006095
• Scaffold ID: Ga0097679_1054120
• Source Dataset Name: Wastewater bioreactor microbial communities from Cape Town, South Africa - Thiocy_cont_500_biof - 1398105538000 (version 2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1665
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Cnidaria → Anthozoa → Hexacorallia → Actiniaria → Aiptasiidae → Exaiptasia → Exaiptasia diaphana (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Bioremediation → Hydrocarbon → Unclassified → Unclassified → Wastewater Bioreactor → Wastewater Bioreactor Microbial Communities From Cape Town, South Africa

Source Dataset Sampling Location

• Location Name: South Africa: Cape Town
• Coordinates
  • Lat. (^o): -33.927
  • Long. (^o): 18.452665

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001866	Metagenome	624	Y
F062911	Metagenome	130	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0097679_10541201	F062911	GAGG	MIVIDRKVIRTQELAWLVAFLAELRHERAAIIIIITREYLHSMIVGVGDKQETSMMVEHQALREGERAFSIAIFLGADRELDSSITIKNIVSHLFQFNLSLSLSHNDKEMIQAPNCSSQRDEDMKPSLTHETRERHQASKQRATRSNKNQSMKEQRTAPPSLTNHSLALTSLFLIMMVMILLDACMPFQSISKRERERERE*
Ga0097679_10541202	F001866	GAG	MAFVSECLESIVVGVGDDDSTLIIDAYSMRMHELAWLIAVRAELEQERAIDRRQYLHSIVEGISDDDSMSIVIDRNARWILELARSYSSLADLEQEREIDRRQEHQSIVGRIGDDDAMMMLVDRNALRIVELEIS*