Scaffold Ga0082021_1131909

Overview

Basic Information

• Taxon OID: 3300006092
• Scaffold ID: Ga0082021_1131909
• Source Dataset Name: Activated sludge microbial communities from wastewater treatment plant in Ulu Pandan, Singapore
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Nanyang Technological University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 134245
• Total Scaffold Genes: 128
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 112 (87.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Wastewater → Activated Sludge → Unclassified → Unclassified → Wastewater Treatment Plant → Activated Sludge Microbial Communities From Wastewater Treatment Plant In Ulu Pandan, Singapore

Source Dataset Sampling Location

• Location Name: Ulu Pandan, Singapore
• Coordinates
  • Lat. (^o): 1.3315
  • Long. (^o): 103.7543

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007999	Metagenome	341	Y
F011188	Metagenome / Metatranscriptome	294	Y
F028447	Metagenome / Metatranscriptome	191	Y
F079734	Metagenome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0082021_113190962	F011188	AGAAGG	VETYNIYMDEAPATADANGEEGWDVEFRVVGHSIDDGDPENNAVLAGLDLVDLINLRDALQQEIDNFALTALEAQAMVADSSEDLMP*
Ga0082021_113190966	F079734	GGA	MTVRVYLAAVQVLNEPPQPGDLVAERVFIHASELPEVWVETEHQSVPERGKAVTFALARPMGIGFERLSGTVERKVPKRT*
Ga0082021_113190979	F028447	GGA	MSHGTEDRFWIPDNPDGSGWADVDWVSATRGTRYHYRHVGTVAEERELLPRYYRVVTRLESDVLHAHENDYYVPRANLADFLAEISLAGGAEVIWHVEGCDQPPPESRVASQDNS*
Ga0082021_113190994	F007999	GGAGG	VTDDLSGVAARAAQARNNLVAALRECGELAVAVEQLEGPDLLEVLVYLDSLRFVMAESGQLLQGVVRGFTEE*