Scaffold Ga0082018_1019657

Overview

Basic Information

• Taxon OID: 3300006091
• Scaffold ID: Ga0082018_1019657
• Source Dataset Name: Marine microbial communities from the Eastern Tropical South Pacific Oxygen Minumum Zone, cruise NBP1315, 2013 - sample NBP125
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Major University, Chile
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 1218
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Eastern Tropical South Pacific Oxygen Minumum Zone, Cruise Nbp1315, 2013

Source Dataset Sampling Location

• Location Name: Eastern Topical South Pacific
• Coordinates
  • Lat. (^o): -13.71
  • Long. (^o): -81.389
  • Depth (m): 405

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005148	Metagenome / Metatranscriptome	410	Y
F008755	Metagenome / Metatranscriptome	328	Y
F009404	Metagenome / Metatranscriptome	318	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0082018_10196571	F008755	GGAG	MNKSRVARDLWRKVFNDNLINLSDGDARKQVVRDFLNDPVNKKSGWKAKDARFFRLGFQKVAKENNFNVMNVGVTPTPSRSKTNKGSMNINVKSKQKNPAPMGEQLKKPEEVKGLGALPTTPQLEQQQAQAVQYSAQSVGQIFETIFNIFSSRTGCSPLSQNERIALGEAWSPIFNEYFSGHSNWVMPV
Ga0082018_10196572	F009404	AGGAG	MSDEPEIIQPKGESLVKHCPICGVEFDEIVLTNRWLKCDSCETIFQVKVKTGE*
Ga0082018_10196573	F005148	GGAG	MKQKKYEEFLKRTVPESEEVECKKCGLKFCDDFNLICLGALDMCLLCANRNLDKETIKEKYHE*