Scaffold Ga0082018_1011113

Overview

Basic Information

• Taxon OID: 3300006091
• Scaffold ID: Ga0082018_1011113
• Source Dataset Name: Marine microbial communities from the Eastern Tropical South Pacific Oxygen Minumum Zone, cruise NBP1315, 2013 - sample NBP125
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Major University, Chile
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 1595
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Eastern Tropical South Pacific Oxygen Minumum Zone, Cruise Nbp1315, 2013

Source Dataset Sampling Location

• Location Name: Eastern Topical South Pacific
• Coordinates
  • Lat. (^o): -13.71
  • Long. (^o): -81.389
  • Depth (m): 405

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012921	Metagenome / Metatranscriptome	276	Y
F013815	Metagenome / Metatranscriptome	268	Y
F072442	Metagenome / Metatranscriptome	121	Y
F080505	Metagenome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0082018_10111131	F080505	N/A	LVSARDDIWSQVDKTGRRWVELSWFANAQLGRTGPEFGKVEKDLNTLITNLVKKHLTPILGKNAVVREHEYELWSNMKSHLKAGREGGGNRLRLVIKDYFDGIEKVLKKNKKVMGNIIYGYTKSKRMTDNAWDEQIVNNIKVKTIHIWPDKPGVFRQTEDEIKKQITDIKNWSIKAWDTTMDLEIYTREVVKKEIGK*
Ga0082018_10111132	F072442	AGGA	MKTFKEFFQLGVTKPSKFDVQNYLNQLGTRLMQLPDIIRTIEKHFKNIKKLKLDRSGRKVLSFEEHIPEEITKRDIKKNK*
Ga0082018_10111133	F013815	GGAG	MYFVQYEKTLPPWYIGTDKVQAETSEDAVKEFYKHHDSFEDRVRSVREVQDTYQK*
Ga0082018_10111134	F012921	AGG	MADDFDFGFSAVSTDEFKKTQTDTEPTPSTGVSSDEFNELKKKIDSISSLIQTLGDKEDTSLFDETGETVKATGEKIARVEDKIDKILAMESSQVASALEEQGSSIRAVIDEVEERKGELNEKFSGKLKELESLVIPMLKGLMKNADKEYIYW