NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0082015_1050736

Scaffold Ga0082015_1050736


Overview

Basic Information
Taxon OID3300006090 Open in IMG/M
Scaffold IDGa0082015_1050736 Open in IMG/M
Source Dataset NameMarine microbial communities from the Eastern Tropical South Pacific Oxygen Minumum Zone, cruise NBP1315, 2013 - sample NBP124
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMajor University, Chile
Sequencing StatusFinished

Scaffold Components
Scaffold Length (bps)662
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → unclassified Nitrososphaerales → Nitrososphaerales archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Eastern Tropical South Pacific Oxygen Minumum Zone, Cruise Nbp1315, 2013

Source Dataset Sampling Location
Location NameEastern Topical South Pacific
CoordinatesLat. (o)-13.71Long. (o)-81.389Alt. (m)Depth (m)250
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016284Metagenome / Metatranscriptome248Y

Sequences

Protein IDFamilyRBSSequence
Ga0082015_10507362F016284AGGAMTSKKLKDLRKEILDKYSGKLTGYEHLDDGTGDYAKSIPDESEEKYDYPKYSEETSEKT*

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