Scaffold Ga0075019_10148325

Overview

Basic Information

• Taxon OID: 3300006086
• Scaffold ID: Ga0075019_10148325
• Source Dataset Name: Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1370
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds → Freshwater And Sediment Microbial Communities From Various Areas In North America, Analyzing Microbe Dynamics In Response To Fracking

Source Dataset Sampling Location

• Location Name: Pennsylvania, USA
• Coordinates
  • Lat. (^o): 41.1289
  • Long. (^o): -78.4195

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002396	Metagenome / Metatranscriptome	564	Y
F004392	Metagenome / Metatranscriptome	440	N
F099394	Metagenome / Metatranscriptome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0075019_101483251	F099394	N/A	ATIKTTTIWFFSDIGFSFLTASEVVPPLTEQQNPRKSGCFQETEVSSI*
Ga0075019_101483252	F004392	AGGA	MPVNGPETISDLKTSQPVTPEGRSVRAAKDTKPAVARGAATRRRRDQQESSKTNGEERFFLASANRNGDAPTLGRECATEAEAIIEAFREKVNLYRVTEFQTRADIGRSGEPILRKETLKKNNPAS*
Ga0075019_101483253	F002396	GAGG	MRSLFPSTYDRADVLMSAGCSTFVSAALILVIPRVGIILLEILLGLFFIGCALAARARLRIQARSQVEEGPEGSTNSKTKWFDRYDVLMILTVVAVYSSVSGLLRHAGLSEGTVGILPLILFAAGILLKPRAVQFIERRRKDRTTGTHDGRAHVDAGEKQEIARKETVERCQ*