Scaffold Ga0081761_1311870

Overview

Basic Information

• Taxon OID: 3300006082
• Scaffold ID: Ga0081761_1311870
• Source Dataset Name: Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample FS907_Anemone_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Marine Biological Laboratory
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 776
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Diffuse Flow → Diffuse Hydrothermal Flow Volcanic Vent → Diffuse Hydrothermal Flow Volcanic Vent Microbial Communities From Axial Seamount, Northeast Pacific Ocean

Source Dataset Sampling Location

• Location Name: Axial seamount, northeast pacific ocean
• Coordinates
  • Lat. (^o): 45.933231
  • Long. (^o): -130.013645
  • Depth (m): 1542

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023876	Metagenome	208	Y
F032038	Metagenome	181	Y
F081756	Metagenome / Metatranscriptome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0081761_13118701	F032038	N/A	MENKKDKNIWLVIEKYVYSNSTPSHSVKKTATSVEEAIGFKLALEKLNEQKDVSYFLASDVDTVMEQVISSHNQSVKKKEVV*VMNLNNQSFTLNIMQQSINVY*KKSNT**
Ga0081761_13118702	F023876	N/A	MYIERKATLDNECYEGVHKKHGYAYKRYVDLDAMEEIDNGKTQYRTASVKWTISDQPTLT
Ga0081761_13118703	F081756	N/A	MIDYNLILYIGLFLMALGFILFMVSEMEDRRKDRELFHQQQLTKSFERNKL*