NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0081602_1239815

Scaffold Ga0081602_1239815


Overview

Basic Information
Taxon OID3300006080 Open in IMG/M
Scaffold IDGa0081602_1239815 Open in IMG/M
Source Dataset NameMicrobial communities in diffuse hydrothermal fluids of Manus Basin, Bismarck Sea ? fluid E
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMax Planck Institute for Plant Breeding Research
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)767
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Diffuse Flow → Diffuse Hydrothermal Fluid → Microbial Communities In Diffuse Hydrothermal Fluids Of Manus Basin, Bismarck Sea

Source Dataset Sampling Location
Location NameManus Basin, Bismarck Sea
CoordinatesLat. (o)-3.720639Long. (o)151.675313Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011620Metagenome / Metatranscriptome289Y
F019388Metagenome / Metatranscriptome230N
F072734Metagenome121N

Sequences

Protein IDFamilyRBSSequence
Ga0081602_12398151F072734GGAGMSMMKFDDSKIKEIRKRKEQGLPPPPTDGDVVEQSKNAKGGSELIYQRVKERVPDDLWNYFQIILSRVREYEDKP
Ga0081602_12398152F011620GGAMFDKILQAVLRFFGKEKPEPPTEENNESLEALERIEALDKIGEST*
Ga0081602_12398153F019388AGGAMRTPNEQNPYLVETKNGQILKFNKIDADNEAATKQLDGDDVEVFHDGKLQYKLHGIEQGKLF*
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