NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0081594_1044815

Scaffold Ga0081594_1044815


Overview

Basic Information
Taxon OID3300006077 Open in IMG/M
Scaffold IDGa0081594_1044815 Open in IMG/M
Source Dataset NameMicrobial communities in diffuse hydrothermal fluids of Manus Basin, Bismarck Sea ? fluid B
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMax Planck Institute for Plant Breeding Research
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2511
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Diffuse Flow → Diffuse Hydrothermal Fluid → Microbial Communities In Diffuse Hydrothermal Fluids Of Manus Basin, Bismarck Sea

Source Dataset Sampling Location
Location NameManus Basin, Bismarck Sea
CoordinatesLat. (o)-3.7992608Long. (o)152.1013353Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023622Metagenome / Metatranscriptome209Y
F101353Metagenome / Metatranscriptome102N

Sequences

Protein IDFamilyRBSSequence
Ga0081594_10448152F101353GGAMITFKQYVKEAQAPFNTRSMIFVNYESPALILSSTMIDRIFGQTKVDAWHVTDLDGLKGLKRIEGKKSSISVLTDIEPGRVKIFTKGVETGGGYCVSLEGSLLVSADFDIYSERLEGGRRAIAIESETYPNLYKDMIKMQDKMWNKYGEKGKLDAGQDFNKLGNSLTQKQKGQFVKEWIDNCESILTKNKKAQEELRKFGRSDWSTYNESVINQIKIKRIYVINDNKLERFGKSYELAKKEFKDVLEVTSKRMGEIIKK*
Ga0081594_10448155F023622GAGGMKTFKEFQGKTPPQIVEQVYFKVSIPDMSTMFMKASSESAVKLDMRKKLKPDVVKEVTIERVTKAEMRKIYRAMGQGKEDEKEKEPAEEK*
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