Scaffold Ga0081594_1016637

Overview

Basic Information

• Taxon OID: 3300006077
• Scaffold ID: Ga0081594_1016637
• Source Dataset Name: Microbial communities in diffuse hydrothermal fluids of Manus Basin, Bismarck Sea ? fluid B
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Max Planck Institute for Plant Breeding Research
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4882
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Diffuse Flow → Diffuse Hydrothermal Fluid → Microbial Communities In Diffuse Hydrothermal Fluids Of Manus Basin, Bismarck Sea

Source Dataset Sampling Location

• Location Name: Manus Basin, Bismarck Sea
• Coordinates
  • Lat. (^o): -3.7992608
  • Long. (^o): 152.1013353

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001930	Metagenome	615	Y
F005610	Metagenome / Metatranscriptome	395	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0081594_10166374	F001930	N/A	MKTFKGYLKEREVAWQQSASTKIFDFSQIQYMQIPLTSKTMEWIFKVQLPRATVFHVTSVDGFKKLKKLQNKRKSISAFFNMDASTMESGIQGGGGVVAELDANIIMSSKGDLMSMPDKTGRRWVELMNIDKKKTMHKELEQMLIDIAIKHDPKTKELIKIEPDIGLGAWWHLRTTLKDDGKKLALVIADYIDGVNAILKKHKKDIQGAVHGYVVRRGTVPRKTGDSEWYMWDEQVVDKIKIEKVHTFYSPSHADRPKKEIVPQLGKIPHKHWNNARELSTYVSQVAEAEIRSMGRSKR*
Ga0081594_10166375	F005610	AGGA	VRSFKEFLTEADSEEVRDAKKVFTALQGMYPKIPKFPLVFKNLQTSKNLDKRGGGYLQTSKLKGGKVIFVDKMVIDDSGLGSFEPDYAVVHEFAHAILAVTKGDLGHNKKHADLTYKLAQKFGLA*