Scaffold Ga0081592_1145789

Overview

Basic Information

• Taxon OID: 3300006076
• Scaffold ID: Ga0081592_1145789
• Source Dataset Name: Microbial communities in diffuse hydrothermal fluids of Manus Basin, Bismarck Sea ? fluid A
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Max Planck Institute for Plant Breeding Research
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 854
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. TMED197 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Diffuse Flow → Diffuse Hydrothermal Fluids → Microbial Communities In Diffuse Hydrothermal Fluids Of Manus Basin, Bismarck Sea

Source Dataset Sampling Location

• Location Name: Manus Basin, Bismarck Sea
• Coordinates
  • Lat. (^o): -3.7999163
  • Long. (^o): 152.1008595

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023368	Metagenome / Metatranscriptome	210	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0081592_11457892	F023368	AGGAGG	MHKYSKETTKYKDISNEDKVFTSLDKYDSNETDKLGMLLAHLSMPQMCASWVSEDDFNSLLEKYKIDITPYVKDDTRITTSIKGEIQSELFHLIDKDKYKKRNLIKALRNEFPDVNSGVICRLIKKLLSLRVLEIDRTYKTKPFVIKGKYYIN*