Scaffold Ga0081592_1132850

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0081592_1132850

Scaffold Ga0081592_1132850

Overview

Basic Information
Taxon OID	3300006076 Open in IMG/M
Scaffold ID	Ga0081592_1132850 Open in IMG/M
Source Dataset Name	Microbial communities in diffuse hydrothermal fluids of Manus Basin, Bismarck Sea ? fluid A
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Max Planck Institute for Plant Breeding Research
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	921
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Diffuse Flow → Diffuse Hydrothermal Fluids → Microbial Communities In Diffuse Hydrothermal Fluids Of Manus Basin, Bismarck Sea

Source Dataset Sampling Location
Location Name	Manus Basin, Bismarck Sea
Coordinates	Lat. (^o)	-3.7999163	Long. (^o)	152.1008595	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F005148	Metagenome / Metatranscriptome	410	Y
F008755	Metagenome / Metatranscriptome	328	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0081592_11328501	F008755	GGAG	MNKSRVARDLWRKIFNENIIDLKDGDARKQVVREFLADPVNKKAGWKSKDARFMRLGFQKVAKENNFNVMNIGLNPTPIRSKTQKGSLNINVKSKQKNPSPMMDAIKPPTEQEKKSGAIPTTPQLENQQAQAVQYSAQSVGQIFETLFNIFSARTGCSPLNQNERIALGEAWAP
Ga0081592_11328503	F005148	AGGAG	LKQKKYEEFLKRNLPESEEVECKNCGRKYYDEYNLICLGALEMCLLCANRNLDKLTIKKAYNVKQ*

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