NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0081592_1072166

Scaffold Ga0081592_1072166


Overview

Basic Information
Taxon OID3300006076 Open in IMG/M
Scaffold IDGa0081592_1072166 Open in IMG/M
Source Dataset NameMicrobial communities in diffuse hydrothermal fluids of Manus Basin, Bismarck Sea ? fluid A
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMax Planck Institute for Plant Breeding Research
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1470
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Diffuse Flow → Diffuse Hydrothermal Fluids → Microbial Communities In Diffuse Hydrothermal Fluids Of Manus Basin, Bismarck Sea

Source Dataset Sampling Location
Location NameManus Basin, Bismarck Sea
CoordinatesLat. (o)-3.7999163Long. (o)152.1008595Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020018Metagenome226Y
F062817Metagenome130Y

Sequences

Protein IDFamilyRBSSequence
Ga0081592_10721662F020018GGAMIQITKWLNPEDETWYRGTYITVLEWLMIEKEHIANLTGKITTIRTNSEGAKAIFRQRIK
Ga0081592_10721663F062817AGGAMFQDKMADEADWKDGMNIFRSRVIEQLDGIIEVLDILEREIAIIKQKI

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.