Scaffold Ga0081592_1060383

Overview

Basic Information

• Taxon OID: 3300006076
• Scaffold ID: Ga0081592_1060383
• Source Dataset Name: Microbial communities in diffuse hydrothermal fluids of Manus Basin, Bismarck Sea ? fluid A
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Max Planck Institute for Plant Breeding Research
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1673
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Diffuse Flow → Diffuse Hydrothermal Fluids → Microbial Communities In Diffuse Hydrothermal Fluids Of Manus Basin, Bismarck Sea

Source Dataset Sampling Location

• Location Name: Manus Basin, Bismarck Sea
• Coordinates
  • Lat. (^o): -3.7999163
  • Long. (^o): 152.1008595

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003515	Metagenome / Metatranscriptome	482	Y
F009537	Metagenome / Metatranscriptome	316	N
F019729	Metagenome / Metatranscriptome	228	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0081592_10603831	F019729	AGTAG	MNHLKDINLSWARHLRFATELALKLFLLSLIAVVHGIFPSIFTSKVSDEVHKLNEELS*
Ga0081592_10603834	F009537	GAGG	MNVDSRVITLALFLIAQSVGAIWWASGLSSEVNRLSGLVDKSDQFQTEIQRAVSGLDVLNFKVEELWKAIERLEEADIVLREVDSEIMVQHETIFAWLAEGDAEQTAKGNPYD*
Ga0081592_10603835	F003515	N/A	TLMKTLILFIALTMSAFAGPPEGMVKQMIPFPAMCLPATVEKHHFAALMGALISDYGVHISITFSATLDQSKRVAIIENPATGLAGVLMITDEQTCIAFSGQDRQEFIRPPDHPVGAENEAPKT*