NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0081592_1046858

Scaffold Ga0081592_1046858


Overview

Basic Information
Taxon OID3300006076 Open in IMG/M
Scaffold IDGa0081592_1046858 Open in IMG/M
Source Dataset NameMicrobial communities in diffuse hydrothermal fluids of Manus Basin, Bismarck Sea ? fluid A
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMax Planck Institute for Plant Breeding Research
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2009
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (57.14%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Diffuse Flow → Diffuse Hydrothermal Fluids → Microbial Communities In Diffuse Hydrothermal Fluids Of Manus Basin, Bismarck Sea

Source Dataset Sampling Location
Location NameManus Basin, Bismarck Sea
CoordinatesLat. (o)-3.7999163Long. (o)152.1008595Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010920Metagenome / Metatranscriptome297Y
F016410Metagenome / Metatranscriptome247Y
F016673Metagenome245Y
F067830Metagenome / Metatranscriptome125Y

Sequences

Protein IDFamilyRBSSequence
Ga0081592_10468582F016410N/AMRRFSSKKEQLEWADKLLRKLSDRNTGGVTPIIKKMITENYIGRLKK*
Ga0081592_10468583F010920GGAGMSEIKTYDVLISYPIKVGAESEEHVKEILMANELLRNAADLTLKITEAIDEKT*
Ga0081592_10468584F067830GGAGGMRKPKLTIVDGVDGKTLAYRNKTCVEIFPLTQEVGFTDYSYTYEEIIAIGKKLEELLEKDLVNVT*
Ga0081592_10468585F016673N/AMISESDTEDIVIKSYVELYLKALNESKSYKFIKIIKSRMFELIKRKQIRNQTK*

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.