Scaffold Ga0081592_1046858

Overview

Basic Information

• Taxon OID: 3300006076
• Scaffold ID: Ga0081592_1046858
• Source Dataset Name: Microbial communities in diffuse hydrothermal fluids of Manus Basin, Bismarck Sea ? fluid A
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Max Planck Institute for Plant Breeding Research
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2009
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Diffuse Flow → Diffuse Hydrothermal Fluids → Microbial Communities In Diffuse Hydrothermal Fluids Of Manus Basin, Bismarck Sea

Source Dataset Sampling Location

• Location Name: Manus Basin, Bismarck Sea
• Coordinates
  • Lat. (^o): -3.7999163
  • Long. (^o): 152.1008595

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010920	Metagenome / Metatranscriptome	297	Y
F016410	Metagenome / Metatranscriptome	247	Y
F016673	Metagenome	245	Y
F067830	Metagenome / Metatranscriptome	125	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0081592_10468582	F016410	N/A	MRRFSSKKEQLEWADKLLRKLSDRNTGGVTPIIKKMITENYIGRLKK*
Ga0081592_10468583	F010920	GGAG	MSEIKTYDVLISYPIKVGAESEEHVKEILMANELLRNAADLTLKITEAIDEKT*
Ga0081592_10468584	F067830	GGAGG	MRKPKLTIVDGVDGKTLAYRNKTCVEIFPLTQEVGFTDYSYTYEEIIAIGKKLEELLEKDLVNVT*
Ga0081592_10468585	F016673	N/A	MISESDTEDIVIKSYVELYLKALNESKSYKFIKIIKSRMFELIKRKQIRNQTK*