Scaffold Ga0081592_1043722

Overview

Basic Information

• Taxon OID: 3300006076
• Scaffold ID: Ga0081592_1043722
• Source Dataset Name: Microbial communities in diffuse hydrothermal fluids of Manus Basin, Bismarck Sea ? fluid A
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Max Planck Institute for Plant Breeding Research
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2109
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (28.57%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → unclassified Saprospirales → Saprospirales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Diffuse Flow → Diffuse Hydrothermal Fluids → Microbial Communities In Diffuse Hydrothermal Fluids Of Manus Basin, Bismarck Sea

Source Dataset Sampling Location

• Location Name: Manus Basin, Bismarck Sea
• Coordinates
  • Lat. (^o): -3.7999163
  • Long. (^o): 152.1008595

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007771	Metagenome / Metatranscriptome	345	Y
F026028	Metagenome / Metatranscriptome	199	Y
F026902	Metagenome	196	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0081592_10437223	F026028	AGG	MSICTNCYHRIKHSNVIEVGQLWNNEPYLAVVCSDKCKEEIEKKVTDGTWMVMRSFPKTESDDGLPTALTDKQFGV*
Ga0081592_10437225	F007771	N/A	METIIHAKNIDKKVRLALYGMLHHSATKLFPRRMKYVSIKLHLKHYVYDGVAMIEEDTKITNPRNFKIIIDPYRLEKDDWGRERNYSEWVSELLRALAHEMVHVKQYVMGELTFKKGQMCWKKQKVDFKSEDDYYRSPHEVEAHGKEKWLQLGYTATWNKIEEKNG*
Ga0081592_10437227	F026902	N/A	MDRYRIEYAEKGIPGILCKYVIGTEELLSVLLKLKYF