NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0081592_1034165

Scaffold Ga0081592_1034165


Overview

Basic Information
Taxon OID3300006076 Open in IMG/M
Scaffold IDGa0081592_1034165 Open in IMG/M
Source Dataset NameMicrobial communities in diffuse hydrothermal fluids of Manus Basin, Bismarck Sea ? fluid A
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMax Planck Institute for Plant Breeding Research
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2510
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (87.50%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Diffuse Flow → Diffuse Hydrothermal Fluids → Microbial Communities In Diffuse Hydrothermal Fluids Of Manus Basin, Bismarck Sea

Source Dataset Sampling Location
Location NameManus Basin, Bismarck Sea
CoordinatesLat. (o)-3.7999163Long. (o)152.1008595Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002078Metagenome / Metatranscriptome596Y
F013820Metagenome / Metatranscriptome268Y
F015741Metagenome / Metatranscriptome252Y
F022754Metagenome / Metatranscriptome213Y

Sequences

Protein IDFamilyRBSSequence
Ga0081592_10341653F015741AGGAVVCVMFSTGCSILPELVAPAANFAIGFYDHNDYYSKECLWYDEIKLNDDTKKWLLESNPPEIVSEDLSKVSRNNDIYKEVCKEHKSIADKLTDKVDRVVDKTLMATD*
Ga0081592_10341654F002078AGGAGMDIATMFEGQGWFAIAGQIVLIFTAVTGALPDKFVQKIPVLGTVWPIFNWLAGNIFNNINHPKGMAAHSEVEEEIDKAKASVRKRSGMRDVLDGM*
Ga0081592_10341655F022754AGTAGMNELIVAIMLVIPSPYKMVDWTVNEVPTQIQVIHKSGLEVSYTATPVSCDFKPRHKREMIFRSPQDRCYSVFDLSSPRFVRHPDYWYKIELPKPPLVNSGE*
Ga0081592_10341656F013820GGAGMVPTIISFIDKLWPGGKTYALMGLGVLMTICQMGGWHNFSSEAWGLLGIGGAATWKMGADRK*
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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