NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0081592_1023260

Scaffold Ga0081592_1023260


Overview

Basic Information
Taxon OID3300006076 Open in IMG/M
Scaffold IDGa0081592_1023260 Open in IMG/M
Source Dataset NameMicrobial communities in diffuse hydrothermal fluids of Manus Basin, Bismarck Sea ? fluid A
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMax Planck Institute for Plant Breeding Research
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3279
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Diffuse Flow → Diffuse Hydrothermal Fluids → Microbial Communities In Diffuse Hydrothermal Fluids Of Manus Basin, Bismarck Sea

Source Dataset Sampling Location
Location NameManus Basin, Bismarck Sea
CoordinatesLat. (o)-3.7999163Long. (o)152.1008595Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F027019Metagenome / Metatranscriptome196Y
F089009Metagenome / Metatranscriptome109N

Sequences

Protein IDFamilyRBSSequence
Ga0081592_10232603F027019AGGAGMAISDALDVNVHSGGTGAVTPNIADQFIPEIWGQAILDVFQQTIMMNNVGIDLSPDVASHGDVIHMPHIGVPELEAFTHGAEIDADVTSAGSMTSEQTNLTIDQYNVASAYVPDIVEVQANYDLLSIYAKQLGYACARGFDNFLHYQVANNFQGLLASATGAVGGDANTSMHIQSTGSVLSQANLTSLMALMLGETGSTDGWHLVLSPDMYSSLNTLTSYSQGTQAPLGADFGRSGNAGSLLGMPVWVAQSPYMGSASSGADVAADTTKGILAVADLETSGTDDNDIVYGYVIHESALYYAFSKQAKMTASYRHAYLSTLVTCESVYGGAIRNTDADGNRRAFAIVDYE*
Ga0081592_10232605F089009N/AMIIPDFKKIVKFDREFFDKLGKKTVVQHRTVVQVDGINARTNNTFVQYTTDYKRRKSQGKAVKKGQSQRSTKVNPPNLTLTGQMMDSFKFIRASNSGFIYGITDSRQAQKLIGNQTGHYGKNTNTRKKRIVSDKENPLPIKVKDKVGAAIAGKIAQNFKDVFTSKGYVVNIIRM*
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