Scaffold Ga0007881_1012438

Overview

Basic Information

• Taxon OID: 3300006072
• Scaffold ID: Ga0007881_1012438
• Source Dataset Name: Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH12Aug09
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2529
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Cryptomonadales → Cryptomonadaceae → Cryptomonas → Cryptomonas curvata (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Crystal Bog, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0072
  • Long. (^o): -89.6063

Associated Families

Family	Category	Number of Sequences	3D Structure?
F051689	Metagenome	143	Y
F074375	Metagenome	119	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0007881_10124384	F051689	GGA	MSALLRLDALARIFVSMCANLFPFMKHGGLLYLCNEKIHSILHSASEIMRWGCLINCSGEAAETAHKINVKGPGSNVNQRDSALGTLMTHARRKETARLMGGAIQGNNM*
Ga0007881_10124385	F074375	N/A	MITELEVLLNMVGAAACRLKERLDMIYGNRSDCDGRRFSGAHETVLPLCSVARSIFNQLRKSTTGKASKKRVDSGAASRISGRPDGRITGMDMRHILLLLPFLLFDLLGELVEHHNTLHGSDLNSPAPDLIAWVLVLLEWYRLYR*