Scaffold Ga0007876_1033773

Overview

Basic Information

• Taxon OID: 3300006071
• Scaffold ID: Ga0007876_1033773
• Source Dataset Name: Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH24Aug09
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1410
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Crystal Bog, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0072
  • Long. (^o): -89.6063

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016117	Metagenome / Metatranscriptome	249	N
F024248	Metagenome / Metatranscriptome	206	N
F073067	Metagenome / Metatranscriptome	120	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0007876_10337733	F073067	N/A	MEPAVRVAPAPTHPGANERLPRVDHLPRSDEAIVPEQLPGVEPLAAGACINPCLERTGVFGKTLSSFSGFLTDASMPLFLKIATVAYALY*
Ga0007876_10337734	F024248	N/A	VEYGSFPRVPIGLFCCGRGHQHPPAQVVPTSTLSLSPRPLQAVDPALIARSFALPLIRSMYQAPAIRPPLLRQDALRPSTPEVQVVPLGDLDVQADEAGRVVSPRPSTSAAAANGSLFLW
Ga0007876_10337735	F016117	N/A	MDSIHIELSPRLGLLIAAWKNFFTRLHAQSVLTDNGLQYLLALLVDKLQEAIDSEFYPLVLDWLRETLPKVLNCRGTVGLINQVPAHLWTSDHIFRHNYFVCLERRANRLSIPS*