Scaffold Ga0075017_100027488

Overview

Basic Information

• Taxon OID: 3300006059
• Scaffold ID: Ga0075017_100027488
• Source Dataset Name: Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3733
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds → Freshwater And Sediment Microbial Communities From Various Areas In North America, Analyzing Microbe Dynamics In Response To Fracking

Source Dataset Sampling Location

• Location Name: Pennsylvania, USA
• Coordinates
  • Lat. (^o): 41.1752
  • Long. (^o): -78.4168

Associated Families

Family	Category	Number of Sequences	3D Structure?
F037351	Metagenome	168	Y
F059298	Metagenome / Metatranscriptome	134	Y
F095791	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0075017_1000274885	F095791	N/A	MRRHLVGGIYIVQAVSGDVTEYWAAAILQENAVAAVEKELGPGWIVILTDRRLTNQRLSTLKMLPNTVRKL*
Ga0075017_1000274887	F059298	GGTGG	MKNAIAAHLPDEHFVIRVDGRVKSHHRRFLDALREGLQLRDQFPQHDIKVCAQASGEHHFAMAG*
Ga0075017_1000274889	F037351	N/A	TEGKYSVELFKEGGEGAGQEEIIDRHDNLTVARAIYRGRVSQNPGRLVMLCDRARVLARSDRPETMP*