Scaffold Ga0075017

Basic Information
Taxon OID	3300006059 Open in IMG/M
Scaffold ID	Ga0075017_100014050 Open in IMG/M
Source Dataset Name	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Ga0075017_100014050 Open in IMG/M

Source Dataset Name

Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	5126
Total Scaffold Genes	8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (62.50%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

5126

Total Scaffold Genes

8 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

5 (62.50%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (66.67%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds → Freshwater And Sediment Microbial Communities From Various Areas In North America, Analyzing Microbe Dynamics In Response To Fracking

Source Dataset Ecosystem

Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds → Freshwater And Sediment Microbial Communities From Various Areas In North America, Analyzing Microbe Dynamics In Response To Fracking

Source Dataset Sampling Location
Location Name	Pennsylvania, USA
Coordinates	Lat. (^o)	41.1752	Long. (^o)	-78.4168	Alt. (m)	Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

Pennsylvania, USA

Coordinates

Lat. (^o)

41.1752

Long. (^o)

-78.4168

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F001059	Metagenome / Metatranscriptome	790	Y
F020513	Metagenome	223	Y
F041182	Metagenome / Metatranscriptome	160	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0075017_1000140501	F020513	AGGA	VINEKNIIDTSIEIPTGNKTIVEEIIREGYTKMVDYLRLTQAKNTYNRLSDYHYLTIPVSNSTEPIRGIDYIHPVVTPGVDYATAVITKCLMPNGKVNFEFERFNEVDSTASTQATEMVKYMMNSKNNAYQVVRDWAQDSLLHKNGIVMVSPIREPVTQYKEVDGTLDQLKTFETMAAEKGLKATRNGKLVRKDVDMQGVMQDAQQASQASQDPNNSTPPVDVKDSINSHTIYTAQYKLKGYSTTIRVKHVAQHYFVCNPTIPCIQDQDFIGFFDPMTIHEAKAQYPEIDLEKFADHAKYGPAGAYQAGALENDLALHARDSTPVPGQGAVASQGADRYSRVVMLTTCWIRKDVDGDGEEEIVEMCYSGSYIVYVKEVEMIPLASMCPKPITGNFFGYSLAERLIPMQEYATAIGRAEISFAMQASTPRIGVNPEFIDAEEIQRGVSAMFILDRKFDPAKHIFQFEPMQGNLGYIQSAMERFDSDKMAMIGMTSPSDVLNPEAMKDGNSGYKLQLAMGPNQLIQDEMVKNCAIGLSDCLYLIWKT
Ga0075017_1000140504	F001059	AGGA	MATYDIEALKEDLPTAKDLAQFVYDKTGIALDLVGKTKTDQYIVAKQALEGKKVPSDFLTDKNPYIDSKELIPEDELAELPPRNPDLPPVESQIHFFGATNMPHPTDPQSDRKVMIDFRKYENGAITFQIVAPVEKVAVGSRINRYGQTVPEKYTWIDPRTPETLLRRADGTFTEKGRGLYTYCIGEKGAGIWPLIDRDMVTVTAKNISNPWA*
Ga0075017_1000140508	F041182	N/A	DIKDKAKIADKLAPFESSRAPIISIEHVNNVNKEEEPDSEEALSEFLSSLRKLK*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0075017_100014050

Overview

Ecosystem & Geography

Associated Families

Sequences