Scaffold Ga0075026_100126066

Overview

Basic Information

• Taxon OID: 3300006057
• Scaffold ID: Ga0075026_100126066
• Source Dataset Name: Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2012
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1295
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds → Freshwater And Sediment Microbial Communities From Various Areas In North America, Analyzing Microbe Dynamics In Response To Fracking

Source Dataset Sampling Location

• Location Name: USA: Pennsylvania
• Coordinates
  • Lat. (^o): 41.5935
  • Long. (^o): -78.5142

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026423	Metagenome / Metatranscriptome	198	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0075026_1001260661	F026423	GGA	MKSPVVFAKHVALLCMISLPVSASCAASLKQQPTIVKPDCSIAWDKTNDPKVTGYQLTVIDRSNQAKKEVHFIPAPTTKMSCKDAGARHEGLWDVTVQSCYDKLRCGSPSQVVPIHITAK