NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0075163_10251614

Scaffold Ga0075163_10251614


Overview

Basic Information
Taxon OID3300006056 Open in IMG/M
Scaffold IDGa0075163_10251614 Open in IMG/M
Source Dataset NameWastewater effluent complex algal communities from Wisconsin, to seasonally profile nutrient transformation and Carbon sequestration - JI 10/23/14 1A DNA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2032
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Nutrient Removal → Unclassified → Unclassified → Wastewater Effluent → Wastewater Effluent Complex Algal Communities From Wisconsin, To Seasonally Profile Nutrient Transformation And Carbon Sequestration

Source Dataset Sampling Location
Location NameMilwaukee, Wisconsin, USA
CoordinatesLat. (o)43.023Long. (o)-87.895Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008866Metagenome / Metatranscriptome326Y
F014707Metagenome / Metatranscriptome260Y

Sequences

Protein IDFamilyRBSSequence
Ga0075163_102516142F008866GGAGMINKCEKYDIFNDKWIEIPDIIQKRQNAALAVHNQRYLYAFCGYDGYRNVDTFERLDFLDEDKGWEMFDLKSVAKDIDVVDIRKNRMGVINLDFDRMLIFGGERNNKEYKDAYIYEFYENKFYQFSDLVRTSNFIMQPLYYSGKYIVFDFLNNIHELNLENLQFEYHIFHKDEENANRNL
Ga0075163_102516143F014707N/AMTSKTKEKDINEEFFKNLDKSEKYIWLCNDCKKFTYTTEYSKEHKRCWADLVENMYDDIKKINEDNLESVQGMSSEFKDEVEFMSKKFQYFEENNPFEMNLKLVNKIYDNIIDMINKKRDEALEKMTSLRDNYMRNIQQNINKVQNMIDKSEEVMNKIKAELNKMKKQTPVQFCKDLLKSNISSDLVDDCSDIATFQRQEFTKIKQSFIDTNTVVYNDSNAVIDQGKNLREFLIEKINNFYSNYSKYQTKYAFTVVMNMKEFIVYLIDSNKVTKVSYVNDFVIPSYARWVDISGDKLILTGGEKDYIESLNSTYMFKFRKFENTDEGFSAKVFLKANMIYKRRAHSLIYFNDYL*
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