Basic Information | |
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Taxon OID | 3300006055 Open in IMG/M |
Scaffold ID | Ga0097691_1006184 Open in IMG/M |
Source Dataset Name | Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-1 deep-072012 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 6609 |
Total Scaffold Genes | 10 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 7 (70.00%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
Associated Families | 2 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil → Arctic Peat Soil Microbial Communities From The Barrow Environmental Observatory Site, Barrow, Alaska, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | Barrow Environmental Observatory site, Barrow, Alaska | |||||||
Coordinates | Lat. (o) | 71.2999 | Long. (o) | -156.61 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F009643 | Metagenome / Metatranscriptome | 315 | Y |
F012393 | Metagenome / Metatranscriptome | 281 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0097691_10061848 | F009643 | AGG | MSNAWKARLDGALRGGEVAGLYFTTALLIVVEFCFVCWLNRIQIPDVPNAGSGFIVLPPWYQKPRFEVTLLLTILAGLLFSVCWGLWDLWQKRTKTVSWEKAMQSVRQRVKTTTFVAALTGLQLALVTWLR* |
Ga0097691_10061849 | F012393 | N/A | MVEDRQVTTEDVLEAARRRRRLCDDVEVDDPVTDDAVLTAFEARMEQRLDLGVVNRALNVFLEPRNPFEPERTRKPKMEAVIFGMLFGVAIAAFLLFNLAAPRLQVHP* |
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