Scaffold Ga0097691_1000032

Overview

Basic Information

• Taxon OID: 3300006055
• Scaffold ID: Ga0097691_1000032
• Source Dataset Name: Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-1 deep-072012
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 128452
• Total Scaffold Genes: 136
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 92 (67.65%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil → Arctic Peat Soil Microbial Communities From The Barrow Environmental Observatory Site, Barrow, Alaska, Usa

Source Dataset Sampling Location

• Location Name: Barrow Environmental Observatory site, Barrow, Alaska
• Coordinates
  • Lat. (^o): 71.2999
  • Long. (^o): -156.61

Associated Families

Family	Category	Number of Sequences	3D Structure?
F051308	Metagenome	144	Y
F051367	Metagenome	144	Y
F071593	Metagenome	122	Y
F090676	Metagenome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0097691_1000032109	F051308	N/A	MTRTSKFIWLTAMLWFSLTGWIVAQCPVNNPDDDIPPELPLVTSSTRHGEPRLPESGYLSNNSYASTYFGFVFDLPLALDGHRLMMPLMPPGQHALLAMGFQEGRRSGTLLITASESNNPIHEMTDEERKAEFLAWAKGEPRNQITPPDWLTRSGRFYHISKHKGDVTTVQYWTFIKNYLIRVKVESNDRDFLSKTKLAVANVKFYCAQEDGTVIDEQGKFVPTPGEGYQGPTIPTAVVNAALDEQPALEVIPTGEAAAGVYRNDEIGLTYTYPTTWEMAKREPDPPAKDETEQRTRDVLNACSLVLLRLTSAAVEGAKSETRTIMLRAIDQTCLGLPAPASITDHLGAESLGAYLQMLGAFGELRSTNLAMRSDHLFAEYSGVVGEHPESQALAQRRNEAVAVTRHRKLLLVWTWIAASAAELDNMPKSSVSFEDAPPMELVAADVAAKR*
Ga0097691_1000032118	F071593	AGTAG	VISHRRVIIVTSLLVGISVAAWGQESHRPVAGAPPPEAAPTGAINPELETMTRAVAIQARPDQVGYFHSAIASTDVALQQSRELQTLGSAADSTPTVNARSLALRDAIDDVDHYNGRFMASFSKTQETELKPLRKRLRKSYTFVAKETKAVQQDMEPGKVVPARLASAAANLEKALSDFRTDQIRLAREMGIQSK*
Ga0097691_100003230	F051367	AGCAG	MFSLSIVLIVAGLMFGGATALIGFGGLLGAWFHRSLGAPLPLPTLRRPEERRISMWVGVAGLLLWASLFVISLKVAP*
Ga0097691_100003262	F090676	GGA	MKHFLMVAACVAALGWSCVAQAPAATTGKNTTLIGCLTGPDADDRYTLTSMQHRMGVEVVGIDELKTGAGGKVKLTGSWEPLPGAETKKGDASQRFKATAVSVIEERCTAPSPTTPVSKKKEQKKQ*