Scaffold Ga0097691_1000003

Overview

Basic Information

• Taxon OID: 3300006055
• Scaffold ID: Ga0097691_1000003
• Source Dataset Name: Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-1 deep-072012
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 231976
• Total Scaffold Genes: 248
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 152 (61.29%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil → Arctic Peat Soil Microbial Communities From The Barrow Environmental Observatory Site, Barrow, Alaska, Usa

Source Dataset Sampling Location

• Location Name: Barrow Environmental Observatory site, Barrow, Alaska
• Coordinates
  • Lat. (^o): 71.2999
  • Long. (^o): -156.61

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000443	Metagenome / Metatranscriptome	1132	Y
F005456	Metagenome / Metatranscriptome	400	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0097691_1000003128	F000443	N/A	MPTTGAINAAIAWSKVDVLTPSQRLTAEIQIRGRLRDTINDPEPVFHLRNVSAEPLIPGAVALNGVPEGLFSKAYVGGIRTIEPEPPPPDQIIEMIRRYVMFQANTFLVTGAVEFPKATEPAMHNEILMKSRFFSVLDATVTIFGVTAKSWTQPLIMVNRDLMVGLYLG*
Ga0097691_1000003201	F005456	GAG	VPYVEDKPTQGGFGSPSEADFTRMIRAEVDSWTPRKGPDWTDVLIRIAGSGPSPWVVYTTASVAMVVILIAAYLVGSALQLGALGPPPAQVHLP*