Scaffold Ga0075029_100039305

Overview

Basic Information

• Taxon OID: 3300006052
• Scaffold ID: Ga0075029_100039305
• Source Dataset Name: Freshwater sediment microbial communities from North America - Little Laurel Run_MetaG_LLR_2013
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2710
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds → Freshwater And Sediment Microbial Communities From Various Areas In North America, Analyzing Microbe Dynamics In Response To Fracking

Source Dataset Sampling Location

• Location Name: USA: Pennsylvania, Clearfield County
• Coordinates
  • Lat. (^o): 41.170727
  • Long. (^o): -78.4726

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000042	Metagenome / Metatranscriptome	3762	Y
F001851	Metagenome / Metatranscriptome	626	Y
F005764	Metagenome / Metatranscriptome	391	Y
F013120	Metagenome / Metatranscriptome	274	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0075029_1000393053	F013120	GGAGG	MEYFRLDHPPDRLFLCNRSNCEDIADYLEVNEQSREEFICAAHTSSQRHASVLPKGVPAADPHRSRPAA*
Ga0075029_1000393054	F000042	AGGAG	MTNTKFIVKVDRGCTHAPQYVQRIDRSPIRTTTDRKLALVMGKFAAQDAAKSLQTSHCVPELVSVQVGA*
Ga0075029_1000393055	F001851	AGGAG	MSATSVFVGLLLVLFTILMFYRMRKLKPQIAGFGSQRMCPSCGLITSRSKACCLECGKPLTAVSGTRL*
Ga0075029_1000393056	F005764	GGGGG	MEPMLSSLRAILRGALILGLSLSVFAQIPTVPDASGFPVGRKTTDFPLTALPPAPIPHPVFEFRDIRIGDEMKEAERTFLALKQPSLYSRPGLCGSDGIKRIETCTDVLDTGEYVNMTILDRRVAQIYVSTDRRTQGNTFNSYVVALGTKYGRPDKLETRYYRNGLETGTSGEHLRWLNGDQYMEGNESERSITIGSKNLDVKIDEQEHPYERN*