Scaffold Ga0075029_100007101

Overview

Basic Information

• Taxon OID: 3300006052
• Scaffold ID: Ga0075029_100007101
• Source Dataset Name: Freshwater sediment microbial communities from North America - Little Laurel Run_MetaG_LLR_2013
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6164
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → Bryobacter → Bryobacter aggregatus (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds → Freshwater And Sediment Microbial Communities From Various Areas In North America, Analyzing Microbe Dynamics In Response To Fracking

Source Dataset Sampling Location

• Location Name: USA: Pennsylvania, Clearfield County
• Coordinates
  • Lat. (^o): 41.170727
  • Long. (^o): -78.4726

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022505	Metagenome / Metatranscriptome	214	Y
F029879	Metagenome / Metatranscriptome	187	Y
F057229	Metagenome / Metatranscriptome	136	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0075029_1000071012	F057229	GGAGG	MSNRWKSYLDRTLQEGEMFGLVFTTLLLIVVEGCFVYWLNHIQLPDRQFTVSGFLVLPPWYRKPRFEVTLLLTIAAGMLFQLCLGLWDVWRKRDRLVSTDILKSLRRRLNAAVSVAALAGVNLALAAWLR*
Ga0075029_1000071013	F029879	N/A	MDAEVLTESELREALRKRRPVFPDVTVEQPVTLEAADAEFRAARRNRADIGIANHILNLFLEPRNPFEPKRVRKPKVDAVVFGTLVALVVIAVLAFNLAAPRPY*
Ga0075029_1000071016	F022505	AGGAG	MLKNKVATLLVIASAMLIGAGMTWQQRLLFVGGIVFGSVVEALPDLVDRLKEALTDRWRLSQVVKRSTAA*