Scaffold Ga0075029

Basic Information
Taxon OID	3300006052 Open in IMG/M
Scaffold ID	Ga0075029_100004035 Open in IMG/M
Source Dataset Name	Freshwater sediment microbial communities from North America - Little Laurel Run_MetaG_LLR_2013
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300006052 Open in IMG/M

Scaffold ID

Ga0075029_100004035 Open in IMG/M

Source Dataset Name

Freshwater sediment microbial communities from North America - Little Laurel Run_MetaG_LLR_2013

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	8194
Total Scaffold Genes	11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	7 (63.64%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (60.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

8194

Total Scaffold Genes

11 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

7 (63.64%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (60.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → Acidobacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds → Freshwater And Sediment Microbial Communities From Various Areas In North America, Analyzing Microbe Dynamics In Response To Fracking

Source Dataset Ecosystem

Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds → Freshwater And Sediment Microbial Communities From Various Areas In North America, Analyzing Microbe Dynamics In Response To Fracking

Source Dataset Sampling Location
Location Name	USA: Pennsylvania, Clearfield County
Coordinates	Lat. (^o)	41.170727	Long. (^o)	-78.4726	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Pennsylvania, Clearfield County

Coordinates

Lat. (^o)

41.170727

Long. (^o)

-78.4726

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000624	Metagenome / Metatranscriptome	977	Y
F000703	Metagenome / Metatranscriptome	928	Y
F002853	Metagenome / Metatranscriptome	526	Y
F015771	Metagenome / Metatranscriptome	252	Y
F073888	Metagenome / Metatranscriptome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0075029_10000403510	F000703	GAG	MQIREYQESDLAALRSIHATQGFDYPLPDLSNPLFVTKLVLADGDETQQTKDGQLESGATKILGAALLRLTAEAYLLLDPRAGTPRERWQWLLALHAAAERDAWQRGLEDVHAWLPPPIAQKFGKRIQRLGWLRDDAWTPYCKRLNSGPTL*
Ga0075029_10000403511	F015771	N/A	STPAPAPSPIASVSVQASNGWFDVSVTDASESRPGLFYFAESDTTPAFGAPRVYFMGSSRNLYVQLGNQTLYWRAYSQYIGSLPSVPVSFGAPPTAVAGGGATGPAPLPSSGSGVFPNGVPRSGNGFGIHPGSRITRQSVL*
Ga0075029_1000040355	F073888	N/A	MPARDWIRLSELVVAFLLALAVFFSWRADRRDRSQLESELAATKQLLAAADTRQHDRDAQLAQTLATLAAEKRTIITPAQIIHDLPSQLPLPSPLVLQSVPASPDSPSPKTNAIIPAEDLKPLYDFTIDCKACQSKLTTAQADLTDERAKTSALTRERDDALRIARGGSLFRRITRAAKWFIIGAAAGAVAAKAVH*
Ga0075029_1000040357	F000624	AGGA	MPTHWYAVLTAIFTVGVQFVIFLRWLYRRMRKEEIAHAFIHDIATNHLPHIYNALQKIAAQQGIELDDTPLVHFVDLNGHRRRR*
Ga0075029_1000040358	F002853	GAGG	MGRGAQATTRQMTDEQLASLNALNQQFLGQQQQIGNTLLPQYQSILNNPGLSPADQAAVTGQSQGSLASAFDSLQQSAQNRLARTRNSAGFGELTDELARQKGIAEAGQAQQNQLAFTNTAFQRQMAALQGLSGLFGVDSNLLGRTLGIPAELLNVRNNASRSTGNGFFSALGSGVGASLGALPGAFF*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0075029_100004035

Overview

Ecosystem & Geography

Associated Families

Sequences