Scaffold Ga0075029_100000227

Overview

Basic Information

• Taxon OID: 3300006052
• Scaffold ID: Ga0075029_100000227
• Source Dataset Name: Freshwater sediment microbial communities from North America - Little Laurel Run_MetaG_LLR_2013
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 30805
• Total Scaffold Genes: 37
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 32 (86.49%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 10 (100.00%)
• Associated Families: 10

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds → Freshwater And Sediment Microbial Communities From Various Areas In North America, Analyzing Microbe Dynamics In Response To Fracking

Source Dataset Sampling Location

• Location Name: USA: Pennsylvania, Clearfield County
• Coordinates
  • Lat. (^o): 41.170727
  • Long. (^o): -78.4726

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001596	Metagenome / Metatranscriptome	666	Y
F001643	Metagenome / Metatranscriptome	659	Y
F004823	Metagenome / Metatranscriptome	422	Y
F006278	Metagenome / Metatranscriptome	377	Y
F010114	Metagenome / Metatranscriptome	308	Y
F017708	Metagenome	239	Y
F020070	Metagenome	226	Y
F029198	Metagenome	189	Y
F036885	Metagenome	169	Y
F048483	Metagenome	148	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0075029_10000022714	F004823	AGGAG	MYATKAVNGVPAIQRDGQSVLNVCDQSWEFANWLCALLNELGRKSELLLNERDREWANANDRAFRRTAHHA*
Ga0075029_10000022717	F029198	GAGG	MDSEPNSGAVRVHGEVIVLHCWACGTAHCVNLELCGPEELAHMVCSNSHCRMSMFLINELVLDDKARKQMTNNELTPRATYSRFWK*
Ga0075029_10000022719	F006278	GAGG	MCRAEIQWLASGPTLKFEGRLVADWAEQARSLVTKNVLPKGLIVDLTEVSYIDSAGEQLLKWLASAGAVFIAGSVYAFTVCDRLRLPPMQEITERSKRRHGSSGEKSSIKYSHPVEAI*
Ga0075029_10000022720	F001596	AGGAG	MSWFHSSMAPVDARNHASPAEVVACFQDQTNLLGRLAFLITSDHAKATLAVAQACEVTLQGNRPFRDWLFEWAKAATIARAISHGTEAIRICEPTYKDQRCLHVEHLSQGDTEERAASLDLILGTDAQTLIAELDPLCRAVLVLRVAIRSSIQDCALRLNVSRTAVLAANCHALTWLQKRQEKPAEENLILARIS*
Ga0075029_10000022721	F010114	GAGG	MIIELNDDDTRLLRTVLLEQVQEHLSYTDTSEVAERLYRLATRFESRGREVANITTA*
Ga0075029_10000022722	F036885	GGGGG	MADKKDRERVIAEITLSHLMRLGNEQGYPVSREQALAFLNQEGRAFEMWKYMMQAAEEFIAGSLFQHSFVSGGHNGFASRPRPMRSVGNAPL*
Ga0075029_10000022725	F017708	AGGAG	MAKVIEFYIPKNFRTPLRAAAQPQLGKIIEFCPPTKRSA*
Ga0075029_1000002274	F001643	GGAG	MNIPTDTLIDMLYLILAGELAIGASDAAEIEQIQRELQRRGGAQCWSFQTVN*
Ga0075029_1000002275	F020070	GGTGG	MPASNTHVRSASVALSSPDVYRASSVFVFGCVFVVIGAYCFCSSAFAQTSDSRTAEEPSNSWTATTDLKSDDLLPERIPARIIENHRRNGNRTLDQRSVELRGTDGHFEPYQDIERQTLTVDASTVRTTARTFARDVNGVKSLVQVTEEEKHILPGDDSSIVRVTYNPDVNGRIQPVQREIVETKRIGKDVEETNTTVMLSSINGGLAPAFKTREFRKRAANDTVERETTTCLPDVNGKWQLSEIRQNTTTQQAEHRRIDERVFRPDAEGKLGQISRVMSQESESTSGEKRSIEENYSIDVPGTTRDGNLHLVERKASTESSSSTGERATEQKVEQTNPGDPGSGLRVSVLVRGWMVPGPSGEQATVTIRARDSNGNLGIVAVDTTQADRIPTIQIQQTPAEKP*
Ga0075029_1000002276	F048483	AGGAGG	MCSSILILQAASTSALIVQGACCDICPPVHEKYEAEFNPLHMKWILFDDTKGNSRAQMRWVVDR*