Scaffold Ga0075029_100000090

Overview

Basic Information

• Taxon OID: 3300006052
• Scaffold ID: Ga0075029_100000090
• Source Dataset Name: Freshwater sediment microbial communities from North America - Little Laurel Run_MetaG_LLR_2013
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 41138
• Total Scaffold Genes: 45
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 26 (57.78%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds → Freshwater And Sediment Microbial Communities From Various Areas In North America, Analyzing Microbe Dynamics In Response To Fracking

Source Dataset Sampling Location

• Location Name: USA: Pennsylvania, Clearfield County
• Coordinates
  • Lat. (^o): 41.170727
  • Long. (^o): -78.4726

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001591	Metagenome / Metatranscriptome	667	Y
F067254	Metagenome / Metatranscriptome	126	Y
F071890	Metagenome / Metatranscriptome	121	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0075029_10000009010	F001591	GGAG	MDRRKERRLNLELPVRIWGVDRMARPFAEIVRVGNVSNRGAVLIGMRSKMQAGDVLDVQLGASRAQFRIVWISFSGEAGIQALEFERPVFDAGIGIGLPKVFEMVGTG*
Ga0075029_10000009012	F071890	GAGG	MTSTDMSKDSIELLCNHCGQTFSAFLHQMAEQNEKVVCPSCREGDCRPAKAEPGAKKRPAKKIV*
Ga0075029_10000009033	F067254	N/A	MTPAEATRERQNAERWLGSAGDQLELLAERTLDAHRQETVGQIRNYMEGARSALKEGDVRRASTLAQKAHLLAEDLVKH*