Scaffold Ga0075028

Basic Information
Taxon OID	3300006050 Open in IMG/M
Scaffold ID	Ga0075028_100001603 Open in IMG/M
Source Dataset Name	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2014
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300006050 Open in IMG/M

Scaffold ID

Ga0075028_100001603 Open in IMG/M

Source Dataset Name

Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2014

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	8278
Total Scaffold Genes	12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	11 (91.67%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

8278

Total Scaffold Genes

12 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

11 (91.67%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds → Freshwater And Sediment Microbial Communities From Various Areas In North America, Analyzing Microbe Dynamics In Response To Fracking

Source Dataset Ecosystem

Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds → Freshwater And Sediment Microbial Communities From Various Areas In North America, Analyzing Microbe Dynamics In Response To Fracking

Source Dataset Sampling Location
Location Name	USA: Pennsylvania, Clearfield County
Coordinates	Lat. (^o)	41.170727	Long. (^o)	-78.4726	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Pennsylvania, Clearfield County

Coordinates

Lat. (^o)

41.170727

Long. (^o)

-78.4726

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F012495	Metagenome / Metatranscriptome	280	Y
F035459	Metagenome / Metatranscriptome	172	Y
F084683	Metagenome / Metatranscriptome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0075028_10000160310	F035459	GAG	MIPINFSGRIIPPPIRSLNAMLAFFLAFVMFCAFPAVRQLRAQAGDVPTAEFRTIAGELSSARQSGAGEDKLRMMKAFTFLDSIALSALNAPAGPNLEGANRTLAGLASHTLPVGENYRIAKLGGTPAVYAMVINFGLGGPAAVRVYAGAAGHLMFVAGIDHLVQEDFFDSDVELVAVSNSEPVFVTVSGRTDDLSTGAFTVWRLDGQRLTSLWISDLLQQSSYEAEEDGFRIAYCSQVDEDRPSQCLKMSRDLYRMVSGEWKRIESIDLPLAAPAVK*
Ga0075028_1000016035	F012495	GGAG	MNNLLAIVPIVIAFSGVLVWLLFPWRGSSGTAASSTHPNFNDALPAPKHFRYFSQIRQALSRTDDEYLIENAPSAVAKQALRDRRAVARSYLEGLHEDFSNLARLGRIIATLSPEVSHKQETERLILTLKFQMLYALVWLRLSTGKIPLQNMEHLTGLVGRLAARMDEAMAEIVALSSAQNPDRLGV*
Ga0075028_1000016036	F084683	GGA	MNSLELILTCSIFLFLIMLCVLVFARKVQTILPLFAAYSCVMLFDLAGVWLIYHRFGFASLTSYYAYWVALLINAVVRSFAIAELCRYGLRAYHGIWALVWRVLTTLSILLLARTCLDAWGQPNRVAIYGTTIDRDFALASIVILAVLLLFRNYYGIAVEPLQRAIAVGICFICVVDFVGNTVLRNIFTGYLLSFFLSNQQAIWSALTPQFERVRESWNAIHLVSFMVSMGIWCFALRKPLPAPAEAPVLLPAGVYRELSPAINLRLASFNNRMVELLKP*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0075028_100001603

Overview

Ecosystem & Geography

Associated Families

Sequences