Scaffold Ga0075417_10016738

Overview

Basic Information

• Taxon OID: 3300006049
• Scaffold ID: Ga0075417_10016738
• Source Dataset Name: Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2859
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere → Populus Root And Rhizosphere Microbial Communities From Tennessee, Usa

Source Dataset Sampling Location

• Location Name: USA: Tennessee
• Coordinates
  • Lat. (^o): 35.8443
  • Long. (^o): -83.9607
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003830	Metagenome	466	Y
F008593	Metagenome	331	Y
F027042	Metagenome / Metatranscriptome	196	Y
F031783	Metagenome	181	Y
F051386	Metagenome	144	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0075417_100167382	F008593	N/A	MLMQPYKGYFIEGSALLVHPFSPDWYVGGSVLVSGRSSSIVEIGRFQLQRFTVSIKEVAEWFGLEVARIVVDECLAPREN*
Ga0075417_100167383	F003830	GGAG	MMIDDDTLKQLLRINDELLQLCKFLNEKRDMETSSRLIPLIDDLTHILIEAGKNKLH*
Ga0075417_100167384	F031783	N/A	MLLAAGCAIQQPPVIQPPVIQQAPVSQQPPVSQQPSGLSDTPKSQLNKNRDRDLYECERESAFAGAGDKRKAFDNCMKARGY*
Ga0075417_100167386	F027042	AGGAGG	MTLAVRIISLVMLVSLLGCASQIVQTSQPVTEKTQEEQPKKPAMPTITYRPGF*
Ga0075417_100167387	F051386	GAG	MRLSGSTRLIIFSFILAISTTLTLPYFAFGAARSLGGTGRFKAPQIHGPFGAAHSFGGSGRFGVPGIHQQHFFSHPFNRFGFNRFGFFGVGGGIVYEQPVIFIQQFQPAAAAQPSEPAENRIYVQPRWVDGGYGVEVLQPGYWTYPKQVRER*