Scaffold Ga0075417_10002855

Overview

Basic Information

• Taxon OID: 3300006049
• Scaffold ID: Ga0075417_10002855
• Source Dataset Name: Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5330
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (71.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere → Populus Root And Rhizosphere Microbial Communities From Tennessee, Usa

Source Dataset Sampling Location

• Location Name: USA: Tennessee
• Coordinates
  • Lat. (^o): 35.8443
  • Long. (^o): -83.9607
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003830	Metagenome	466	Y
F008593	Metagenome	331	Y
F027042	Metagenome / Metatranscriptome	196	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0075417_100028552	F027042	AGGAGG	MTLAMRIISLVMLVSLLGCASQIVQTSQPVAEKTQEKQPKKPALPTITYRPGF*
Ga0075417_100028557	F003830	GGAG	MMIDDDTLKQLLRINDELLQLCKWLNEKRDMETSSRLIPPVDDLTHILIEPGKNKLH*
Ga0075417_100028558	F008593	N/A	MMQPYKGYFNTGSALIVHPFSLDWYVGGSVLLPGRFSSIVEIGRFQLQRFTVSIKELAEWFGLEVARLVVDKCLPPRAS*