Scaffold Ga0075024_100009338

Overview

Basic Information

• Taxon OID: 3300006047
• Scaffold ID: Ga0075024_100009338
• Source Dataset Name: Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3928
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (66.67%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds → Freshwater And Sediment Microbial Communities From Various Areas In North America, Analyzing Microbe Dynamics In Response To Fracking

Source Dataset Sampling Location

• Location Name: USA: Pennsylvania
• Coordinates
  • Lat. (^o): 41.5935
  • Long. (^o): -78.5142

Associated Families

Family	Category	Number of Sequences	3D Structure?
F090833	Metagenome / Metatranscriptome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0075024_1000093382	F090833	GGAGG	MRWVVIVSAALSVSPALAAPIQLECKGQTNVYEKGMFSPTEETVSVTLDFALGSVTVGSRAGKWTVPMVNRPNEDMVTTAHREVGVTMGSINRITGVASFGFATAPGFSIFKGVCQRAPEYSF*