Scaffold Ga0082212_10579470

Overview

Basic Information

• Taxon OID: 3300006045
• Scaffold ID: Ga0082212_10579470
• Source Dataset Name: Neocapritermes taracua P3 segment gut microbial communities from Petit-Saut dam, French Guiana - Nt197 P3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 988
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut → Cubitermes And Nasutitermes Termite Gut Microbial Communities From Max Planck Institute For Terrestrial Microbiology, Germany

Source Dataset Sampling Location

• Location Name: Petit - Saut dam, French Guiana
• Coordinates
  • Lat. (^o): 5.0626
  • Long. (^o): -53.0462

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004007	Metagenome	457	Y
F008821	Metagenome	327	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0082212_105794702	F004007	N/A	VLCIHGLTVMLLVQDRGEMAVLPAVTAVLLHHSAMDTWTDCNVVSTG*
Ga0082212_105794703	F008821	GAGG	VFYLQLLQYCYVTVLWIYGLTVMLFLHGRGEMVLPAVTAVLLHHSAMDTWTDCNVVSTG*
Ga0082212_105794704	F004007	GGA	MLLVQVREEMAFLAAVTAVLLHHIATDTWTDCNVVNTG*
Ga0082212_105794705	F004007	GGA	MFLLEGRREMAVLPAVTAVLLYHFAMDTWTDYNVVSTG*
Ga0082212_105794706	F008821	N/A	YFYITVLWIHGLTVMLLVQGRGEMAVLPAVTAVLLNHSAMDTWTDCNVVSTG*