Basic Information | |
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Taxon OID | 3300006041 Open in IMG/M |
Scaffold ID | Ga0075023_100216320 Open in IMG/M |
Source Dataset Name | Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2014 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 748 |
Total Scaffold Genes | 2 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
Associated Families | 2 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds → Freshwater And Sediment Microbial Communities From Various Areas In North America, Analyzing Microbe Dynamics In Response To Fracking |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Pennsylvania | |||||||
Coordinates | Lat. (o) | 41.5935 | Long. (o) | -78.5142 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F000232 | Metagenome / Metatranscriptome | 1513 | Y |
F079644 | Metagenome / Metatranscriptome | 115 | N |
Protein ID | Family | RBS | Sequence |
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Ga0075023_1002163201 | F079644 | AGGA | MQDAIPWCSHADARILLKSEERMYPGYQPKPDDVFHAVGYTTRDISDNTHFHLHGISDRVRMENENLWRQLGPLVRAMQSGKVKREFVEVLSVDPFLGNYEMPYTGPHKEMFLSIEYLSDAAFRLCGEYGIRHPAVIEKVKRADIPGNHGVTLR |
Ga0075023_1002163202 | F000232 | N/A | PSALAVPSYHRILVKHGLIEKTLPIPDAYEVFLKVGADPEVQKLRRKVEHGNKMKHVPALYLATAMALQGMTKQELEALKLRIKEKRV* |
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