NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0075023_100216320

Scaffold Ga0075023_100216320


Overview

Basic Information
Taxon OID3300006041 Open in IMG/M
Scaffold IDGa0075023_100216320 Open in IMG/M
Source Dataset NameFreshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2014
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)748
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds → Freshwater And Sediment Microbial Communities From Various Areas In North America, Analyzing Microbe Dynamics In Response To Fracking

Source Dataset Sampling Location
Location NameUSA: Pennsylvania
CoordinatesLat. (o)41.5935Long. (o)-78.5142Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000232Metagenome / Metatranscriptome1513Y
F079644Metagenome / Metatranscriptome115N

Sequences

Protein IDFamilyRBSSequence
Ga0075023_1002163201F079644AGGAMQDAIPWCSHADARILLKSEERMYPGYQPKPDDVFHAVGYTTRDISDNTHFHLHGISDRVRMENENLWRQLGPLVRAMQSGKVKREFVEVLSVDPFLGNYEMPYTGPHKEMFLSIEYLSDAAFRLCGEYGIRHPAVIEKVKRADIPGNHGVTLR
Ga0075023_1002163202F000232N/APSALAVPSYHRILVKHGLIEKTLPIPDAYEVFLKVGADPEVQKLRRKVEHGNKMKHVPALYLATAMALQGMTKQELEALKLRIKEKRV*

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