Scaffold Ga0073914_10021699

Overview

Basic Information

• Taxon OID: 3300006040
• Scaffold ID: Ga0073914_10021699
• Source Dataset Name: Groundwater microbial communities from the Columbia River, Washington, USA, for microbe roles in carbon and contaminant biogeochemistry - GW-RW metaG T4_30-Apr-14
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1112
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Sand → Unclassified → Sand → Groundwater Microbial Communities From The Columbia River, Washington, Usa

Source Dataset Sampling Location

• Location Name: USA: Columbia River, Washington
• Coordinates
  • Lat. (^o): 46.372
  • Long. (^o): -119.272

Associated Families

Family	Category	Number of Sequences	3D Structure?
F057367	Metagenome	136	N
F063694	Metagenome	129	N
F101138	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0073914_100216991	F063694	N/A	QTERTRMITEMQKQLNTITVGSILAADQLRELHGAAKAAQARLRELIQLIELSCIEHIETTGHDIELVDGKRWYVGSEKKIKAIDDTMILQAVLESSGGDVMKLTTGEFGVLCSSPWKNGAVKQLIGESKFNELFLTTVVQSLETGKAAKVLKVVDPAFLKGGTQ*
Ga0073914_100216992	F101138	GGCGG	MNADELAKSIRSKHDKLETDCKQTVLAVELVALQMKLAALTARVAQLERDDLERTQTQDAKHERFKPR*
Ga0073914_100216994	F057367	GAG	MQEDLPTSSGIDLMTWLNFEAAITRNPRVAQSLRDSANEIGHLRTQLKAAGVHNYNELTSALRDMTRTAEVVLTTPHLQIEQRENARADMA