Scaffold Ga0075365_10027327

Overview

Basic Information

• Taxon OID: 3300006038
• Scaffold ID: Ga0075365_10027327
• Source Dataset Name: Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3630
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere → Populus Root And Rhizosphere Microbial Communities From Tennessee, Usa

Source Dataset Sampling Location

• Location Name: USA: Tennessee
• Coordinates
  • Lat. (^o): 35.8443
  • Long. (^o): -83.9607
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003648	Metagenome / Metatranscriptome	475	Y
F008574	Metagenome / Metatranscriptome	331	Y
F035402	Metagenome / Metatranscriptome	172	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0075365_1002732710	F008574	GGAG	MRKALQFALAAGSMFIFASAAIAQDATVRLSPLFHVQPQIAQEYAPYSVLPSMIWRAPVFPHTWDVQAVVPFTVEETRVPDRASESKPRY*
Ga0075365_100273277	F003648	AGGA	VRANQWRDAFPAKGHHVATKERLAAMAGSLCAVCSGVMVIKVVAPDPRDDALQLRTYVCAECGHSRTYSVDGGES*
Ga0075365_100273279	F035402	AGGAGG	MWFYVQMWLPVLTVALTAAICFSVASFIMAGSVKPHQL*