Scaffold Ga0075465_10000876

Overview

Basic Information

• Taxon OID: 3300006037
• Scaffold ID: Ga0075465_10000876
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_0.19_>0.8_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4914
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (60.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.283
  • Long. (^o): -75.3633

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019829	Metagenome	227	Y
F061848	Metagenome	131	N
F063688	Metagenome	129	N
F072334	Metagenome	121	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0075465_1000087610	F063688	N/A	MESMSRYNSNYGSHDQLQDLRKLNMDLYHQLDEVKRLLDETTRALETSQDELYLALEALRRETPDWTHE*
Ga0075465_100008765	F061848	AGG	MNFLLAKIFTAVTISLTGLAFAYDAYNTPSALPVMPPVTVSLAPLPITTTTTLAPLTDCQYALQLATQAGWPLEEMGTVARIIYRESGCKANAFNPEDTAGGSYGLYQINGYWCRPNAYWPTGWLQAKGILETCEQLFDPVVNTNSALAIWHNSGYGPWALPNP*
Ga0075465_100008766	F019829	N/A	MTDYPIPDPGLTESTRQMYTEKYRETFNNFVDEVFRPNHVPAPKPVDHSILLDELAILREKYMQSGSDEHRFSAAVITAAMAVIIGI*
Ga0075465_100008768	F072334	GGA	MSEIVETPNTQLQKVTLLVAMHDYEADQLNAGEWLQNVLMACAEQKNTGYYGAKEYAKVMQVLSVQNCDVVVSNGI*