NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066656_10005038

Scaffold Ga0066656_10005038


Overview

Basic Information
Taxon OID3300006034 Open in IMG/M
Scaffold IDGa0066656_10005038 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_105
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6260
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (16.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014491Metagenome / Metatranscriptome262N
F016384Metagenome / Metatranscriptome247N

Sequences

Protein IDFamilyRBSSequence
Ga0066656_100050381F016384N/AEDFKSHLAWVMGLGRLSETFSRHAVPNYLVRVLHPLSQSLRVNLLLGMLPDCFLEVRALTEQLARAFQADLKFSKEASFTSKLSRLDVREPSLYKLTGETDTSVLPLLSELGHGWVRMDQPLTGMGASLPVAAASITYTTRDIPELLRLTSAVKRFRELLSKTMSQWSSKLDRKDSPPAPKGS*
Ga0066656_100050385F014491N/AVRNEPHRRSSLNVTPGSPKGSWHNTAMILLVLASLAMFGTIAYTIALQEITNSAISYITGLLISVTGILLGLSGLTPQSKSLERMKLQVTLTIATLLWLVAVVMIAQTAEPFTFAASTAVLRYLFLVGIALFTTLVVMYSTATIEATRQRLMAERAAKSSQPGRTTD*

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