Scaffold Ga0075012_10064326

Overview

Basic Information

• Taxon OID: 3300006033
• Scaffold ID: Ga0075012_10064326
• Source Dataset Name: Freshwater microbial communities in response to fracking from Pennsylvania, USA - Allegheny Zone_MetaG_DW_15
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2899
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (42.86%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Watersheds → Freshwater And Sediment Microbial Communities From Various Areas In North America, Analyzing Microbe Dynamics In Response To Fracking

Source Dataset Sampling Location

• Location Name: Pennsylvania, USA
• Coordinates
  • Lat. (^o): 40.0132
  • Long. (^o): -79.0717

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008401	Metagenome	334	Y
F023840	Metagenome	208	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0075012_100643262	F023840	AGAAG	VKDEHGHLRVGLTLEDDFTLTRLKNTAHSLKGEARDQYLWKTIFRFVCRERAYKSVMEEIGVAIDTNVDIFADSDDETD*
Ga0075012_100643264	F008401	N/A	MESARLLTIAQTAELLNCSAGFVRKRISLTESNQPGGWPKGIFVNLQPNGAKSLYRINKDALEAYLNSAEEEAKVEESAACAI*