NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066651_10540766

Scaffold Ga0066651_10540766


Overview

Basic Information
Taxon OID3300006031 Open in IMG/M
Scaffold IDGa0066651_10540766 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Angelo_100
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)617
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011479Metagenome / Metatranscriptome290Y
F017116Metagenome242Y

Sequences

Protein IDFamilyRBSSequence
Ga0066651_105407661F017116N/AVAFAIFARLAIRGKSLGNFRFQLSIFLLIWVLSEIPHIAGSLGLIATDSLTDIGLDLHAVSMGVFALFVGWRSIRFATLHPTPASGALPIPKEPAKGIKG*
Ga0066651_105407662F011479GGAGMSKILGTDTWKAINFFFDMRTIAREPEEFAALLTKVFGSTSNVLEKKIGESILGKVGAVQQISSSLDFRQILRLAKAKFPRQPLPDQL

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