Scaffold Ga0075470_10024722

Overview

Basic Information

• Taxon OID: 3300006030
• Scaffold ID: Ga0075470_10024722
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_D_<0.8_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1860
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Leptospirillum → Leptospirillum sp. Group II (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.283
  • Long. (^o): -75.3633

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001981	Metagenome / Metatranscriptome	608	N
F011215	Metagenome / Metatranscriptome	293	Y
F029089	Metagenome / Metatranscriptome	189	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0075470_100247225	F001981	N/A	MTYPTLITIPKADICKAEIAQIAQQLTDRINDGEVNPVEAHIKLKAIVKALEATIKATEQTVADEASKHGKTFSAFGAEITLKEGSITPNYEEDEVYADLKAQMKAREELLKVAFRQAGKTAIFDESTGEQVPVCTAKATKASIAVSFK*
Ga0075470_100247226	F011215	N/A	MNLLEQMNADEFKKLLEFKEKFPTIGEDLVRALTEKTLCIHLTLGECIDLSNAIGIPYGQFCNQIFDTFKSKP*
Ga0075470_100247227	F029089	N/A	NDKLGLVPCYEERITATLKADFLALVKKLPAEQQAKFMKDIDHMTPARFEKGIQFIQNQLARP*