Scaffold Ga0075470_10013461

Overview

Basic Information

• Taxon OID: 3300006030
• Scaffold ID: Ga0075470_10013461
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_D_<0.8_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2529
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (28.57%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.283
  • Long. (^o): -75.3633

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006181	Metagenome / Metatranscriptome	379	Y
F040616	Metagenome / Metatranscriptome	161	N
F085603	Metagenome / Metatranscriptome	111	N
F101030	Metagenome / Metatranscriptome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0075470_100134614	F006181	N/A	MKNLIHVIYPDEAVHSFVMDNDMSTADILERVFAEWNHGSGMECEMFIRSKKRSLSVNDIVCVNGEYFQCASFGWNSVTPEYVNELESDVAKHPSRCEGAWFALMDVMWERQNFVVV*
Ga0075470_100134615	F101030	AGGA	MTLTQFQQAFAIAKDFNRDLSNVDDSILYGYGLSSFKPVYTTLEAVAKTIRWQALQFNGEWNAEALNEVAENGRKNFLILG*
Ga0075470_100134616	F085603	N/A	MKVQIEFNTDNAAFEDSFLMEVTRTLQQCKTALLDSERGTITIRRPIKDSNGNRIGVVSIGNN*
Ga0075470_100134617	F040616	N/A	MDPEDIAYEDSVSSDTAGWPGDGSGEDDFADYNQNEAGDYY