Scaffold Ga0075470_10011292

Overview

Basic Information

• Taxon OID: 3300006030
• Scaffold ID: Ga0075470_10011292
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_D_<0.8_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2754
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → Pseudomonas helleri (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.283
  • Long. (^o): -75.3633

Associated Families

Family	Category	Number of Sequences	3D Structure?
F050360	Metagenome / Metatranscriptome	145	Y
F055725	Metagenome / Metatranscriptome	138	Y
F058997	Metagenome / Metatranscriptome	134	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0075470_100112921	F050360	GAG	MNAEQVAHNNMLREIEVFSYGGDVQDDVSDWTDVKTYLPEFSRMVWAACPNAVLCAHQTFLLYMDSDGQWRDNRGYLFSGKVNFWQYADVPECNVSC*
Ga0075470_100112926	F055725	AGGAG	MAFFNGCGIDLKTITELAAQGLSLNSMSKMTGHSKNGIKAALERNDIPYTMGIRERFITVEGVLTSLGDACNAHGFSRESMYAWRVKRGLNEQEGFEAYIVYQQSKRTIDKPILTFKNATVIYKKERYTLTEISDKLKLNRQRFEVFMRQNRYAQNAFERYCYTRGL*
Ga0075470_100112927	F058997	GAGG	MIIYKGCEMTVREACAAMGIDCDDFMAWCKKFALQNYGYALNYYKRTLKHGRK*